J3_8PJ5_011
3D structure
- PDB id
- 8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AG*CGC(A2M)AAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PJ5_011 not in the Motif Atlas
- Geometric match to J3_8C3A_082
- Geometric discrepancy: 0.0946
- The information below is about J3_8C3A_082
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.2
- Basepair signature
- cWW-F-cWW-F-F-cSW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
8PJ5|1|A|A|40
8PJ5|1|A|G|41
*
8PJ5|1|A|C|481
8PJ5|1|A|G|482
8PJ5|1|A|C|483
8PJ5|1|A|A2M|484
8PJ5|1|A|A|485
8PJ5|1|A|A|486
8PJ5|1|A|U|487
*
8PJ5|1|A|A|512
8PJ5|1|A|G|513
8PJ5|1|A|U|514
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 0
- Eukaryotic translation initiation factor 5B
- Chain D
- 40S ribosomal protein S9
- Chain E
- 40S ribosomal protein S23
Coloring options: