J3_8PJ5_015

3D structure

PDB id

8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PJ5_015 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.106

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8PJ5|1|A|U|1350
8PJ5|1|A|G|1351
*
8PJ5|1|A|U|1360
8PJ5|1|A|G|1361
8PJ5|1|A|U|1362
8PJ5|1|A|C|1363
*
8PJ5|1|A|G|1375
8PJ5|1|A|A|1376
8PJ5|1|A|U|1377
8PJ5|1|A|A|1378
8PJ5|1|A|A|1379

Current chains

Chain A

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S2

Chain M

40S ribosomal protein S17

Chain N

40S ribosomal protein SA