J3_8PJ6_008
3D structure
- PDB id
- 8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PJ6_008 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1572
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8PJ6|1|A|U|1340
8PJ6|1|A|C|1341
8PJ6|1|A|U|1342
8PJ6|1|A|U|1343
8PJ6|1|A|A|1344
8PJ6|1|A|G|1345
*
8PJ6|1|A|C|1384
8PJ6|1|A|G|1385
8PJ6|1|A|A|1386
8PJ6|1|A|G|1387
8PJ6|1|A|A|1388
8PJ6|1|A|C|1389
*
8PJ6|1|A|G|1481
8PJ6|1|A|C|1482
8PJ6|1|A|A|1483
8PJ6|1|A|A|1484
8PJ6|1|A|U|1485
8PJ6|1|A|A|1486
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain L
- 40S ribosomal protein S2
- Chain M
- 40S ribosomal protein S17
- Chain Y
- 40S ribosomal protein S16
- Chain Z
- 40S ribosomal protein S3
- Chain h
- 40S ribosomal protein S20
- Chain i
- 40S ribosomal protein S29
- Chain q
- Eukaryotic translation initiation factor 1A, X-chromosomal
Coloring options: