J3_8PK0_006
3D structure
- PDB id
- 8PK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8PK0|1|A|A|3036, 8PK0|1|A|U|3037
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PK0_006 not in the Motif Atlas
- Homologous match to J3_4WF9_009
- Geometric discrepancy: 0.1248
- The information below is about J3_4WF9_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8PK0|1|A|C|3035
8PK0|1|A|A|3036
8PK0|1|A|U|3037
8PK0|1|A|C|3038
*
8PK0|1|A|G|3063
8PK0|1|A|U|3064
8PK0|1|A|U|3065
*
8PK0|1|A|A|3079
8PK0|1|A|U|3080
8PK0|1|A|U|3081
8PK0|1|A|A|3082
8PK0|1|A|A|3083
8PK0|1|A|A|3084
8PK0|1|A|G|3085
Current chains
- Chain A
- 16S rRNA + pre-H68-71 segment
Nearby chains
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain L
- 39S ribosomal protein L14, mitochondrial
- Chain z
- Mitochondrial ribosome-associated GTPase 1
Coloring options: