J3_8PKL_008

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8PKL|1|7|A|2518, 8PKL|1|7|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PKL_008 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1239

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8PKL|1|7|C|2517
8PKL|1|7|A|2518
8PKL|1|7|U|2519
8PKL|1|7|C|2520
*
8PKL|1|7|G|2545
8PKL|1|7|U|2546
8PKL|1|7|A|2547
*
8PKL|1|7|U|2561
8PKL|1|7|U|2562
8PKL|1|7|U|2563
8PKL|1|7|A|2564
8PKL|1|7|A|2565
8PKL|1|7|A|2566
8PKL|1|7|G|2567

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain n

50S ribosomal protein L14