J3_8PKL_035

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8PKL|1|A|U|1212, 8PKL|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PKL_035 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1457

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8PKL|1|A|C|990
8PKL|1|A|U|991
8PKL|1|A|U|992
8PKL|1|A|G|993
8PKL|1|A|A|994
8PKL|1|A|C|995
8PKL|1|A|A|996
8PKL|1|A|U|997
*
8PKL|1|A|A|1044
8PKL|1|A|C|1045
8PKL|1|A|A|1046
8PKL|1|A|G|1047
*
8PKL|1|A|C|1210
8PKL|1|A|U|1211
8PKL|1|A|U|1212
8PKL|1|A|A|1213
8PKL|1|A|C|1214
8PKL|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14