J3_8PNN_006
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8PNN|1|1|A|398, 8PNN|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PNN_006 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0465
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8PNN|1|1|A|369
8PNN|1|1|U|370
8PNN|1|1|G|371
8PNN|1|1|A|372
8PNN|1|1|A|373
8PNN|1|1|A|374
8PNN|1|1|A|375
8PNN|1|1|G|376
8PNN|1|1|A|377
8PNN|1|1|A|378
8PNN|1|1|C|379
*
8PNN|1|1|G|390
8PNN|1|1|A|391
8PNN|1|1|G|392
8PNN|1|1|U|393
8PNN|1|1|G|394
8PNN|1|1|A|395
8PNN|1|1|A|396
8PNN|1|1|A|397
8PNN|1|1|A|398
8PNN|1|1|A|399
8PNN|1|1|G|400
8PNN|1|1|U|401
8PNN|1|1|A|402
8PNN|1|1|C|403
8PNN|1|1|G|404
*
8PNN|1|4|C|19
8PNN|1|4|U|20
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain 9
- 60S ribosomal protein L26-A
- Chain AM
- 60S ribosomal protein L39
- Chain l
- 60S ribosomal protein L4-A
- Chain x
- 60S ribosomal protein L17-A
Coloring options: