J3_8PNN_013

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCGAUC*GGAAU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PNN_013 not in the Motif Atlas

Homologous match to J3_8P9A_055

Geometric discrepancy: 0.0753

The information below is about J3_8P9A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

8PNN|1|1|U|1526
8PNN|1|1|C|1527
8PNN|1|1|G|1528
8PNN|1|1|A|1529
8PNN|1|1|U|1530
8PNN|1|1|C|1531
*
8PNN|1|1|G|1591
8PNN|1|1|G|1592
8PNN|1|1|A|1593
8PNN|1|1|A|1594
8PNN|1|1|U|1595
*
8PNN|1|1|A|1612
8PNN|1|1|A|1613

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 8

60S ribosomal protein L25

Chain AH

60S ribosomal protein L34-A

Chain AL

60S ribosomal protein L38

Chain AM

60S ribosomal protein L39