J3_8PNN_030
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8PNN|1|A|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PNN_030 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.0824
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76375.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8PNN|1|A|A|881
8PNN|1|A|U|882
8PNN|1|A|C|883
8PNN|1|A|A|884
*
8PNN|1|A|U|928
8PNN|1|A|A|929
8PNN|1|A|A|930
8PNN|1|A|C|931
8PNN|1|A|U|932
8PNN|1|A|A|933
8PNN|1|A|C|934
8PNN|1|A|U|935
8PNN|1|A|G|936
*
8PNN|1|A|C|943
8PNN|1|A|A|944
8PNN|1|A|U|945
8PNN|1|A|U|946
8PNN|1|A|U|947
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain AQ
- 60S ribosomal protein L43-A
- Chain C
- 40S ribosomal protein S1-A
- Chain O
- 40S ribosomal protein S13
- Chain P
- 40S ribosomal protein S14-B
- Chain b
- Small ribosomal subunit protein eS26B
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