3D structure

PDB id
8PNN (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Bromolissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
AUCA*UAACUACUG*CAUUU
Length
18 nucleotides
Bulged bases
8PNN|1|A|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8PNN_030 not in the Motif Atlas
Homologous match to J3_8P9A_074
Geometric discrepancy: 0.0824
The information below is about J3_8P9A_074
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76375.1
Basepair signature
cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
Number of instances in this motif group
1

Unit IDs

8PNN|1|A|A|881
8PNN|1|A|U|882
8PNN|1|A|C|883
8PNN|1|A|A|884
*
8PNN|1|A|U|928
8PNN|1|A|A|929
8PNN|1|A|A|930
8PNN|1|A|C|931
8PNN|1|A|U|932
8PNN|1|A|A|933
8PNN|1|A|C|934
8PNN|1|A|U|935
8PNN|1|A|G|936
*
8PNN|1|A|C|943
8PNN|1|A|A|944
8PNN|1|A|U|945
8PNN|1|A|U|946
8PNN|1|A|U|947

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain AQ
60S ribosomal protein L43-A
Chain C
40S ribosomal protein S1-A
Chain O
40S ribosomal protein S13
Chain P
40S ribosomal protein S14-B
Chain b
Small ribosomal subunit protein eS26B

Coloring options:


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