J3_8P9A_074

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

8P9A|1|sR|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76375.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

8P9A|1|sR|A|881
8P9A|1|sR|U|882
8P9A|1|sR|C|883
8P9A|1|sR|A|884
*
8P9A|1|sR|U|928
8P9A|1|sR|A|929
8P9A|1|sR|A|930
8P9A|1|sR|C|931
8P9A|1|sR|U|932
8P9A|1|sR|A|933
8P9A|1|sR|C|934
8P9A|1|sR|U|935
8P9A|1|sR|G|936
*
8P9A|1|sR|C|943
8P9A|1|sR|A|944
8P9A|1|sR|U|945
8P9A|1|sR|U|946
8P9A|1|sR|U|947

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain DR

60S ribosomal protein L43-A

Chain c3

40S ribosomal protein S13

Chain c4

40S ribosomal protein S14-B

Chain d6

Small ribosomal subunit protein eS26B

Chain s1

40S ribosomal protein S1-A