3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
AUCA*UAACUACUG*CAUUU
Length
18 nucleotides
Bulged bases
8P9A|1|sR|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76375.1
Basepair signature
cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
Number of instances in this motif group
1

Unit IDs

8P9A|1|sR|A|881
8P9A|1|sR|U|882
8P9A|1|sR|C|883
8P9A|1|sR|A|884
*
8P9A|1|sR|U|928
8P9A|1|sR|A|929
8P9A|1|sR|A|930
8P9A|1|sR|C|931
8P9A|1|sR|U|932
8P9A|1|sR|A|933
8P9A|1|sR|C|934
8P9A|1|sR|U|935
8P9A|1|sR|G|936
*
8P9A|1|sR|C|943
8P9A|1|sR|A|944
8P9A|1|sR|U|945
8P9A|1|sR|U|946
8P9A|1|sR|U|947

Current chains

Chain sR
16S ribosomal RNA

Nearby chains

Chain DR
60S ribosomal protein L43-A
Chain c3
40S ribosomal protein S13
Chain c4
40S ribosomal protein S14-B
Chain d6
Small ribosomal subunit protein eS26B
Chain s1
40S ribosomal protein S1-A

Coloring options:

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