J3_8PNN_033
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PNN_033 not in the Motif Atlas
- Homologous match to J3_8P9A_077
- Geometric discrepancy: 0.1256
- The information below is about J3_8P9A_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8PNN|1|A|U|1168
8PNN|1|A|G|1169
8PNN|1|A|G|1170
8PNN|1|A|A|1171
*
8PNN|1|A|U|1468
8PNN|1|A|A|1469
8PNN|1|A|C|1470
*
8PNN|1|A|G|1574
8PNN|1|A|G|1575
8PNN|1|A|A|1576
8PNN|1|A|A|1577
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S5
- Chain R
- 40S ribosomal protein S16-A
- Chain T
- 40S ribosomal protein S18-A
- Chain U
- 40S ribosomal protein S19-A
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