3D structure

PDB id
8PNN (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Bromolissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CCAGAC*GGGUG*UUAGACG
Length
18 nucleotides
Bulged bases
8PNN|1|A|A|1217, 8PNN|1|A|G|1445, 8PNN|1|A|C|1447
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8PNN_035 not in the Motif Atlas
Homologous match to J3_8CRE_081
Geometric discrepancy: 0.117
The information below is about J3_8CRE_081
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_87797.1
Basepair signature
cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

8PNN|1|A|C|1215
8PNN|1|A|C|1216
8PNN|1|A|A|1217
8PNN|1|A|G|1218
8PNN|1|A|A|1219
8PNN|1|A|C|1220
*
8PNN|1|A|G|1263
8PNN|1|A|G|1264
8PNN|1|A|G|1265
8PNN|1|A|U|1266
8PNN|1|A|G|1267
*
8PNN|1|A|U|1442
8PNN|1|A|U|1443
8PNN|1|A|A|1444
8PNN|1|A|G|1445
8PNN|1|A|A|1446
8PNN|1|A|C|1447
8PNN|1|A|G|1448

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain L
40S ribosomal protein S10-A
Chain e
Small ribosomal subunit protein uS14A
Chain g
Ubiquitin

Coloring options:


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