J3_8PNN_052

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8PNN|1|AR|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PNN_052 not in the Motif Atlas

Homologous match to J3_8P9A_053

Geometric discrepancy: 0.0478

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8PNN|1|AR|U|1479
8PNN|1|AR|G|1480
8PNN|1|AR|A|1481
8PNN|1|AR|A|1482
8PNN|1|AR|G|1483
8PNN|1|AR|U|1484
8PNN|1|AR|G|1485
*
8PNN|1|AR|C|1857
8PNN|1|AR|A|1858
8PNN|1|AR|A|1859
*
8PNN|1|AR|U|1871
8PNN|1|AR|C|1872
8PNN|1|AR|U|1873
8PNN|1|AR|A|1874

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain DI

60S ribosomal protein L34-A