J3_8PNN_068

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8PNN|1|sR|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PNN_068 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0368

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8PNN|1|sR|A|41
8PNN|1|sR|G|42
8PNN|1|sR|A|43
8PNN|1|sR|U|44
8PNN|1|sR|U|45
8PNN|1|sR|A|46
8PNN|1|sR|A|47
8PNN|1|sR|G|48
*
8PNN|1|sR|C|431
8PNN|1|sR|G|432
8PNN|1|sR|C|433
8PNN|1|sR|G|434
8PNN|1|sR|C|435
8PNN|1|sR|A|436
8PNN|1|sR|A|437
8PNN|1|sR|A|438
8PNN|1|sR|U|439
*
8PNN|1|sR|A|464
8PNN|1|sR|G|465
8PNN|1|sR|U|466

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain s8

40S ribosomal protein S8-A

Chain s9

40S ribosomal protein S9-A