J3_8PPK_011

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AG*CGC(A2M)AAU*(A2M)GU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PPK_011 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0867

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8PPK|1|2|A|40
8PPK|1|2|G|41
*
8PPK|1|2|C|481
8PPK|1|2|G|482
8PPK|1|2|C|483
8PPK|1|2|A2M|484
8PPK|1|2|A|485
8PPK|1|2|A|486
8PPK|1|2|U|487
*
8PPK|1|2|A2M|512
8PPK|1|2|G|513
8PPK|1|2|U|514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23