J3_8PPL_001

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PPL_001 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.1818

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

8PPL|1|A2|A|816
8PPL|1|A2|G|817
8PPL|1|A2|A|818
8PPL|1|A2|G|819
*
8PPL|1|A2|C|829
8PPL|1|A2|A|830
8PPL|1|A2|G|831
*
8PPL|1|A2|C|843
8PPL|1|A2|U|844
8PPL|1|A2|G|845
8PPL|1|A2|G|846
8PPL|1|A2|A|847
8PPL|1|A2|U|848

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AJ

40S ribosomal protein S9

Chain AY

40S ribosomal protein S24