J3_8PPL_011

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*(A2M)GU

Length

20 nucleotides

Bulged bases

8PPL|1|A2|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PPL_011 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0611

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8PPL|1|A2|A|40
8PPL|1|A2|G|41
8PPL|1|A2|A|42
8PPL|1|A2|U|43
8PPL|1|A2|U|44
8PPL|1|A2|A|45
8PPL|1|A2|A|46
8PPL|1|A2|G|47
*
8PPL|1|A2|C|479
8PPL|1|A2|G|480
8PPL|1|A2|C|481
8PPL|1|A2|G|482
8PPL|1|A2|C|483
8PPL|1|A2|A2M|484
8PPL|1|A2|A|485
8PPL|1|A2|A|486
8PPL|1|A2|U|487
*
8PPL|1|A2|A2M|512
8PPL|1|A2|G|513
8PPL|1|A2|U|514

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AJ

40S ribosomal protein S9

Chain AX

40S ribosomal protein S23