J3_8PPL_019

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PPL_019 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.179

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8PPL|1|A2|U|1350
8PPL|1|A2|G|1351
*
8PPL|1|A2|U|1360
8PPL|1|A2|G|1361
8PPL|1|A2|U|1362
8PPL|1|A2|C|1363
*
8PPL|1|A2|G|1375
8PPL|1|A2|A|1376
8PPL|1|A2|U|1377
8PPL|1|A2|A|1378
8PPL|1|A2|A|1379

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein SA

Chain AC

40S ribosomal protein S2

Chain AR

40S ribosomal protein S17