J3_8PV2_014
3D structure
- PDB id
- 8PV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CGAUAGCGCACAAGUAG*CGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8PV2|1|C1|U|336, 8PV2|1|C1|A|344, 8PV2|1|C2|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PV2_014 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.055
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8PV2|1|C1|C|333
8PV2|1|C1|G|334
8PV2|1|C1|A|335
8PV2|1|C1|U|336
8PV2|1|C1|A|337
8PV2|1|C1|G|338
8PV2|1|C1|C|339
8PV2|1|C1|G|340
8PV2|1|C1|C|341
8PV2|1|C1|A|342
8PV2|1|C1|C|343
8PV2|1|C1|A|344
8PV2|1|C1|A|345
8PV2|1|C1|G|346
8PV2|1|C1|U|347
8PV2|1|C1|A|348
8PV2|1|C1|G|349
*
8PV2|1|C1|C|356
8PV2|1|C1|G|357
8PV2|1|C1|A|358
8PV2|1|C1|A|359
8PV2|1|C1|A|360
8PV2|1|C1|G|361
*
8PV2|1|C2|C|21
8PV2|1|C2|U|22
8PV2|1|C2|U|23
8PV2|1|C2|G|24
Current chains
- Chain C1
- 26S rRNA
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein eL39
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