J3_8PV2_017
3D structure
- PDB id
- 8PV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UC*GAGGACCGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 8PV2|1|C1|A|595
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PV2_017 not in the Motif Atlas
- Homologous match to J3_8P9A_048
- Geometric discrepancy: 0.0793
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86133.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8PV2|1|C1|U|493
8PV2|1|C1|C|494
*
8PV2|1|C1|G|579
8PV2|1|C1|A|580
8PV2|1|C1|G|581
8PV2|1|C1|G|582
8PV2|1|C1|A|583
8PV2|1|C1|C|584
8PV2|1|C1|C|585
8PV2|1|C1|G|586
8PV2|1|C1|C|587
8PV2|1|C1|G|588
*
8PV2|1|C1|C|594
8PV2|1|C1|A|595
8PV2|1|C1|A|596
8PV2|1|C1|G|597
8PV2|1|C1|G|598
8PV2|1|C1|A|599
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LE
- 60S ribosomal protein L6
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
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