J3_8PV2_023
3D structure
- PDB id
- 8PV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AUUG*CUUAU*AGACAUU
- Length
- 16 nucleotides
- Bulged bases
- 8PV2|1|C1|U|2477
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PV2_023 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.2748
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86017.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PV2|1|C1|A|2395
8PV2|1|C1|U|2396
8PV2|1|C1|U|2397
8PV2|1|C1|G|2398
*
8PV2|1|C1|C|2475
8PV2|1|C1|U|2476
8PV2|1|C1|U|2477
8PV2|1|C1|A|2478
8PV2|1|C1|U|2479
*
8PV2|1|C1|A|2550
8PV2|1|C1|G|2551
8PV2|1|C1|A|2552
8PV2|1|C1|C|2553
8PV2|1|C1|A|2554
8PV2|1|C1|U|2555
8PV2|1|C1|U|2556
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LG
- 60S ribosomal protein L8
- Chain LN
- Ribosomal protein L15
- Chain Li
- 60S ribosomal protein L36
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