J3_8PV5_014

3D structure

PDB id

8PV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGAUAGCGCACAAGUAG*CGAAAG*CUUG

Length

27 nucleotides

Bulged bases

8PV5|1|C1|U|336, 8PV5|1|C1|A|344, 8PV5|1|C2|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PV5_014 not in the Motif Atlas

Homologous match to J3_8P9A_045

Geometric discrepancy: 0.0636

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

8PV5|1|C1|C|333
8PV5|1|C1|G|334
8PV5|1|C1|A|335
8PV5|1|C1|U|336
8PV5|1|C1|A|337
8PV5|1|C1|G|338
8PV5|1|C1|C|339
8PV5|1|C1|G|340
8PV5|1|C1|C|341
8PV5|1|C1|A|342
8PV5|1|C1|C|343
8PV5|1|C1|A|344
8PV5|1|C1|A|345
8PV5|1|C1|G|346
8PV5|1|C1|U|347
8PV5|1|C1|A|348
8PV5|1|C1|G|349
*
8PV5|1|C1|C|356
8PV5|1|C1|G|357
8PV5|1|C1|A|358
8PV5|1|C1|A|359
8PV5|1|C1|A|360
8PV5|1|C1|G|361
*
8PV5|1|C2|C|21
8PV5|1|C2|U|22
8PV5|1|C2|U|23
8PV5|1|C2|G|24

Current chains

Chain C1

26S rRNA

Chain C2

5.8S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain LC

60S ribosomal protein L4-like protein

Chain LY

60S ribosomal protein L26-like protein

Chain Lj

Ribosomal protein L37

Chain Ll

Ribosomal protein eL39