J3_8PV7_008
3D structure
- PDB id
- 8PV7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.12 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PV7_008 not in the Motif Atlas
- Homologous match to J3_8C3A_008
- Geometric discrepancy: 0.1057
- The information below is about J3_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8PV7|1|C1|A|2395
8PV7|1|C1|U|2396
8PV7|1|C1|U|2397
8PV7|1|C1|G|2398
*
8PV7|1|C1|C|2475
8PV7|1|C1|U|2476
8PV7|1|C1|U|2477
8PV7|1|C1|A|2478
8PV7|1|C1|U|2479
8PV7|1|C1|U|2480
*
8PV7|1|C1|A|2549
8PV7|1|C1|A|2550
8PV7|1|C1|G|2551
8PV7|1|C1|A|2552
8PV7|1|C1|C|2553
8PV7|1|C1|A|2554
8PV7|1|C1|U|2555
8PV7|1|C1|U|2556
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LG
- 60S ribosomal protein L8
- Chain LN
- Ribosomal protein L15
- Chain Li
- 60S ribosomal protein L36
Coloring options: