J3_8PV7_014

3D structure

PDB id

8PV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

CGAUAGCGCACAAGUAG*CGAAAG*CUUG

Length

27 nucleotides

Bulged bases

8PV7|1|C1|U|336, 8PV7|1|C1|A|344, 8PV7|1|C2|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PV7_014 not in the Motif Atlas

Homologous match to J3_8P9A_045

Geometric discrepancy: 0.0487

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

8PV7|1|C1|C|333
8PV7|1|C1|G|334
8PV7|1|C1|A|335
8PV7|1|C1|U|336
8PV7|1|C1|A|337
8PV7|1|C1|G|338
8PV7|1|C1|C|339
8PV7|1|C1|G|340
8PV7|1|C1|C|341
8PV7|1|C1|A|342
8PV7|1|C1|C|343
8PV7|1|C1|A|344
8PV7|1|C1|A|345
8PV7|1|C1|G|346
8PV7|1|C1|U|347
8PV7|1|C1|A|348
8PV7|1|C1|G|349
*
8PV7|1|C1|C|356
8PV7|1|C1|G|357
8PV7|1|C1|A|358
8PV7|1|C1|A|359
8PV7|1|C1|A|360
8PV7|1|C1|G|361
*
8PV7|1|C2|C|21
8PV7|1|C2|U|22
8PV7|1|C2|U|23
8PV7|1|C2|G|24

Current chains

Chain C1

26S rRNA

Chain C2

5.8S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain LC

60S ribosomal protein L4-like protein

Chain LY

60S ribosomal protein L26-like protein

Chain Lj

Ribosomal protein L37

Chain Ll

Ribosomal protein eL39