J3_8PV8_010
3D structure
- PDB id
- 8PV8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8PV8|1|C1|A|2662
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PV8_010 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1339
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8PV8|1|C1|C|2623
8PV8|1|C1|U|2624
8PV8|1|C1|C|2625
*
8PV8|1|C1|G|2649
8PV8|1|C1|A|2650
8PV8|1|C1|A|2651
*
8PV8|1|C1|U|2660
8PV8|1|C1|A|2661
8PV8|1|C1|A|2662
8PV8|1|C1|A|2663
8PV8|1|C1|A|2664
8PV8|1|C1|G|2665
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C4
- 5S ribosomal RNA; 5S rRNA
- Chain CR
- Protein SDA1
- Chain Cz
- rRNA-processing protein
- Chain LD
- 60S ribosomal protein l5-like protein
- Chain LJ
- Putative ribosomal protein
- Chain LT
- 60S ribosomal protein l21-like protein
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