J3_8PVA_010

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PVA_010 not in the Motif Atlas

Homologous match to J3_8VTW_002

Geometric discrepancy: 0.0545

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8PVA|1|a|C|698
8PVA|1|a|A|699
8PVA|1|a|G|700
*
8PVA|1|a|C|732
8PVA|1|a|G|733
8PVA|1|a|A|734
8PVA|1|a|A|735
8PVA|1|a|C|736
*
8PVA|1|a|G|760
8PVA|1|a|A|761
8PVA|1|a|U|762
8PVA|1|a|G|763

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2