J3_8PVA_012

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8PVA|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PVA_012 not in the Motif Atlas

Homologous match to J3_8VTW_005

Geometric discrepancy: 0.1013

The information below is about J3_8VTW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8PVA|1|a|C|1306
8PVA|1|a|A|1307
8PVA|1|a|A|1308
8PVA|1|a|G|1309
*
8PVA|1|a|C|1605
8PVA|1|a|C|1606
8PVA|1|a|C|1607
8PVA|1|a|A|1608
8PVA|1|a|A|1609
8PVA|1|a|A|1610
8PVA|1|a|C|1611
*
8PVA|1|a|G|1620
8PVA|1|a|U|1621
8PVA|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34