J3_8PVA_013

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PVA_013 not in the Motif Atlas

Homologous match to J3_8VTW_006

Geometric discrepancy: 0.118

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8PVA|1|a|C|2091
8PVA|1|a|U|2092
8PVA|1|a|G|2093
*
8PVA|1|a|C|2196
8PVA|1|a|U|2197
8PVA|1|a|A|2198
8PVA|1|a|A|2199
8PVA|1|a|C|2200
*
8PVA|1|a|G|2223
8PVA|1|a|G|2224
8PVA|1|a|A|2225
8PVA|1|a|C|2226
8PVA|1|a|A|2227
8PVA|1|a|G|2228

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2

Chain h

Large ribosomal subunit protein bL9

Chain w

50S ribosomal protein L28