J3_8PVK_001
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGACG
- Length
- 26 nucleotides
- Bulged bases
- 8PVK|1|C1|G|152
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PVK_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.0743
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8PVK|1|C1|C|114
8PVK|1|C1|A|115
8PVK|1|C1|A|116
8PVK|1|C1|A|117
8PVK|1|C1|U|118
8PVK|1|C1|U|119
8PVK|1|C1|U|120
8PVK|1|C1|G|121
8PVK|1|C1|A|122
8PVK|1|C1|A|123
8PVK|1|C1|A|124
*
8PVK|1|C1|U|145
8PVK|1|C1|A|146
8PVK|1|C1|A|147
8PVK|1|C1|U|148
8PVK|1|C1|U|149
8PVK|1|C1|U|150
8PVK|1|C1|G|151
8PVK|1|C1|G|152
8PVK|1|C1|A|153
8PVK|1|C1|G|154
*
8PVK|1|C1|C|256
8PVK|1|C1|G|257
8PVK|1|C1|A|258
8PVK|1|C1|C|259
8PVK|1|C1|G|260
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain Ce
- Ribosome biogenesis protein NOP53
- Chain LG
- 60S ribosomal protein L8
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Li
- 60S ribosomal protein L36
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