J3_8PVK_004
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- AUAG*CGC(A2M)G*UCAAAU
- Length
- 15 nucleotides
- Bulged bases
- 8PVK|1|C1|A|878
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PVK_004 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.172
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8PVK|1|C1|A|810
8PVK|1|C1|U|811
8PVK|1|C1|A|812
8PVK|1|C1|G|813
*
8PVK|1|C1|C|845
8PVK|1|C1|G|846
8PVK|1|C1|C|847
8PVK|1|C1|A2M|848
8PVK|1|C1|G|849
*
8PVK|1|C1|U|874
8PVK|1|C1|C|875
8PVK|1|C1|A|876
8PVK|1|C1|A|877
8PVK|1|C1|A|878
8PVK|1|C1|U|879
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LR
- Ribosomal protein L19
- Chain Lg
- Ribosomal protein l34-like protein
Coloring options: