J3_8PVK_005
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- GAC*GCUAAGG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PVK_005 not in the Motif Atlas
- Homologous match to J3_8C3A_005
- Geometric discrepancy: 0.2268
- The information below is about J3_8C3A_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.3
- Basepair signature
- cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8PVK|1|C1|G|1213
8PVK|1|C1|A|1214
8PVK|1|C1|C|1215
*
8PVK|1|C1|G|1239
8PVK|1|C1|C|1240
8PVK|1|C1|U|1241
8PVK|1|C1|A|1242
8PVK|1|C1|A|1243
8PVK|1|C1|G|1244
8PVK|1|C1|G|1245
*
8PVK|1|C1|C|1260
8PVK|1|C1|A|1261
8PVK|1|C1|C|1262
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CF
- Large ribosomal subunit protein uL10
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain Cz
- rRNA-processing protein
- Chain LK
- 60S ribosomal protein L12-like protein
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