J3_8PVK_008
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PVK_008 not in the Motif Atlas
- Homologous match to J3_8C3A_008
- Geometric discrepancy: 0.1113
- The information below is about J3_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8PVK|1|C1|A|2395
8PVK|1|C1|U|2396
8PVK|1|C1|U|2397
8PVK|1|C1|G|2398
*
8PVK|1|C1|C|2475
8PVK|1|C1|U|2476
8PVK|1|C1|U|2477
8PVK|1|C1|A|2478
8PVK|1|C1|U|2479
8PVK|1|C1|U|2480
*
8PVK|1|C1|A|2549
8PVK|1|C1|A|2550
8PVK|1|C1|G|2551
8PVK|1|C1|A|2552
8PVK|1|C1|C|2553
8PVK|1|C1|A|2554
8PVK|1|C1|U|2555
8PVK|1|C1|U|2556
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain Ce
- Ribosome biogenesis protein NOP53
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LG
- 60S ribosomal protein L8
- Chain LN
- Ribosomal protein L15
- Chain Li
- 60S ribosomal protein L36
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