J3_8PVK_022
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- AGACG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PVK_022 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.075
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.1
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8PVK|1|C1|A|1634
8PVK|1|C1|G|1635
8PVK|1|C1|A|1636
8PVK|1|C1|C|1637
8PVK|1|C1|G|1638
*
8PVK|1|C1|C|1771
8PVK|1|C1|C|1772
*
8PVK|1|C1|G|1776
8PVK|1|C1|A|1777
8PVK|1|C1|A|1778
8PVK|1|C1|A|1779
8PVK|1|C1|A|1780
8PVK|1|C1|U|1781
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CJ
- Pescadillo homolog
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lp
- 60S ribosomal protein L43-like protein
Coloring options: