J3_8PVK_026

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CCAUAC*GG*UG

Length

10 nucleotides

Bulged bases

8PVK|1|C4|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PVK_026 not in the Motif Atlas

Homologous match to J3_8P9A_066

Geometric discrepancy: 0.1488

The information below is about J3_8P9A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_26985.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

7

Unit IDs

8PVK|1|C4|C|9
8PVK|1|C4|C|10
8PVK|1|C4|A|11
8PVK|1|C4|U|12
8PVK|1|C4|A|13
8PVK|1|C4|C|14
*
8PVK|1|C4|G|66
8PVK|1|C4|G|67
*
8PVK|1|C4|U|110
8PVK|1|C4|G|111

Current chains

Chain C4

5S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain Cf

Ribosome production factor 2 homolog

Chain LD

60S ribosomal protein l5-like protein