J3_8PVL_026
3D structure
- PDB id
- 8PVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8PVL|1|C4|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PVL_026 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.1415
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8PVL|1|C4|C|9
8PVL|1|C4|C|10
8PVL|1|C4|A|11
8PVL|1|C4|U|12
8PVL|1|C4|A|13
8PVL|1|C4|C|14
*
8PVL|1|C4|G|66
8PVL|1|C4|G|67
*
8PVL|1|C4|U|110
8PVL|1|C4|G|111
Current chains
- Chain C4
- 5S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Cf
- Ribosome production factor 2 homolog
- Chain LD
- 60S ribosomal protein l5-like protein
- Chain LJ
- Putative ribosomal protein
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