3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UAU*AGACUGC*GAGGAAGGUG
Length
20 nucleotides
Bulged bases
8Q4F|1|A|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Q4F_006 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.1879
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8Q4F|1|A|U|1116
8Q4F|1|A|A|1117
8Q4F|1|A|U|1118
*
8Q4F|1|A|A|1155
8Q4F|1|A|G|1156
8Q4F|1|A|A|1157
8Q4F|1|A|C|1158
8Q4F|1|A|U|1159
8Q4F|1|A|G|1160
8Q4F|1|A|C|1161
*
8Q4F|1|A|G|1175
8Q4F|1|A|A|1176
8Q4F|1|A|G|1177
8Q4F|1|A|G|1178
8Q4F|1|A|A|1179
8Q4F|1|A|A|1180
8Q4F|1|A|G|1181
8Q4F|1|A|G|1182
8Q4F|1|A|U|1183
8Q4F|1|A|G|1184

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
Small ribosomal subunit protein uS2
Chain G
Small ribosomal subunit protein uS7
Chain I
Small ribosomal subunit protein uS9
Chain J
Small ribosomal subunit protein uS10
Chain N
Small ribosomal subunit protein uS14

Coloring options:


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