3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Q4F_009 not in the Motif Atlas
Homologous match to J3_8VTW_002
Geometric discrepancy: 0.0961
The information below is about J3_8VTW_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.5
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

8Q4F|1|a|C|698
8Q4F|1|a|A|699
8Q4F|1|a|G|700
*
8Q4F|1|a|C|732
8Q4F|1|a|G|733
8Q4F|1|a|A|734
8Q4F|1|a|A|735
8Q4F|1|a|C|736
*
8Q4F|1|a|G|760
8Q4F|1|a|A|761
8Q4F|1|a|U|762
8Q4F|1|a|G|763

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
Large ribosomal subunit protein uL2

Coloring options:


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