J3_8Q5I_002
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- AGAC*GGG*CAUAAU
- Length
- 13 nucleotides
- Bulged bases
- 8Q5I|1|1|U|618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Q5I_002 not in the Motif Atlas
- Homologous match to J3_8C3A_002
- Geometric discrepancy: 0.0981
- The information below is about J3_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_50081.1
- Basepair signature
- cWW-cSS-cWW-tSS-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8Q5I|1|1|A|436
8Q5I|1|1|G|437
8Q5I|1|1|A|438
8Q5I|1|1|C|439
*
8Q5I|1|1|G|488
8Q5I|1|1|G|489
8Q5I|1|1|G|490
*
8Q5I|1|1|C|616
8Q5I|1|1|A|617
8Q5I|1|1|U|618
8Q5I|1|1|A|619
8Q5I|1|1|A|620
8Q5I|1|1|U|621
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L32
- Chain AG
- 60S ribosomal protein L33-A
- Chain n
- 60S ribosomal protein L6
- Chain x
- Ribosomal protein L22
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