J3_8Q5I_005

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8Q5I|1|1|A|1478

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Q5I_005 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0664

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8Q5I|1|1|U|1475
8Q5I|1|1|G|1476
8Q5I|1|1|A|1477
8Q5I|1|1|A|1478
8Q5I|1|1|G|1479
8Q5I|1|1|U|1480
8Q5I|1|1|G|1481
*
8Q5I|1|1|C|1853
8Q5I|1|1|A|1854
8Q5I|1|1|A|1855
*
8Q5I|1|1|U|1867
8Q5I|1|1|C|1868
8Q5I|1|1|U|1869
8Q5I|1|1|A|1870

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L34-B

Chain z

60S ribosomal protein L19-A