J3_8Q5I_014
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- AUCAG*CUAACUACUG*CAUUU
- Length
- 20 nucleotides
- Bulged bases
- 8Q5I|1|A|C|919
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Q5I_014 not in the Motif Atlas
- Homologous match to J3_8C3A_036
- Geometric discrepancy: 0.0527
- The information below is about J3_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08408.1
- Basepair signature
- cWW-F-F-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8Q5I|1|A|A|866
8Q5I|1|A|U|867
8Q5I|1|A|C|868
8Q5I|1|A|A|869
8Q5I|1|A|G|870
*
8Q5I|1|A|C|912
8Q5I|1|A|U|913
8Q5I|1|A|A|914
8Q5I|1|A|A|915
8Q5I|1|A|C|916
8Q5I|1|A|U|917
8Q5I|1|A|A|918
8Q5I|1|A|C|919
8Q5I|1|A|U|920
8Q5I|1|A|G|921
*
8Q5I|1|A|C|928
8Q5I|1|A|A|929
8Q5I|1|A|U|930
8Q5I|1|A|U|931
8Q5I|1|A|U|932
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AQ
- 60S ribosomal protein L43-A
- Chain C
- 40S ribosomal protein S1
- Chain O
- 40S ribosomal protein S13
- Chain P
- 40S ribosomal protein S14-A
- Chain b
- 40S ribosomal protein S26
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