J3_8Q5I_021
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 8Q5I|1|A|U|1399, 8Q5I|1|A|U|1400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Q5I_021 not in the Motif Atlas
- Homologous match to J3_8C3A_043
- Geometric discrepancy: 0.0797
- The information below is about J3_8C3A_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.3
- Basepair signature
- cWW-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8Q5I|1|A|A|1321
8Q5I|1|A|A|1322
8Q5I|1|A|C|1323
*
8Q5I|1|A|G|1372
8Q5I|1|A|G|1373
8Q5I|1|A|A|1374
8Q5I|1|A|C|1375
*
8Q5I|1|A|G|1398
8Q5I|1|A|U|1399
8Q5I|1|A|U|1400
8Q5I|1|A|U|1401
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- Ribosomal protein S7
- Chain R
- 40S ribosomal protein S16
- Chain S
- 40S ribosomal protein S17-B
- Chain V
- Ribosomal protein S10
- Chain e
- 40S ribosomal protein S29A
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