J3_8Q5I_024
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CUAUG*CGUCACAGAG*CGUGCG
- Length
- 21 nucleotides
- Bulged bases
- 8Q5I|1|1|C|209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Q5I_024 not in the Motif Atlas
- Homologous match to J3_8C3A_046
- Geometric discrepancy: 0.0804
- The information below is about J3_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24131.1
- Basepair signature
- cWW-F-cSS-cHH-cWW-cWW-F-cWW-cSW-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8Q5I|1|1|C|184
8Q5I|1|1|U|185
8Q5I|1|1|A|186
8Q5I|1|1|U|187
8Q5I|1|1|G|188
*
8Q5I|1|1|C|204
8Q5I|1|1|G|205
8Q5I|1|1|U|206
8Q5I|1|1|C|207
8Q5I|1|1|A|208
8Q5I|1|1|C|209
8Q5I|1|1|A|210
8Q5I|1|1|G|211
8Q5I|1|1|A|212
8Q5I|1|1|G|213
*
8Q5I|1|1|C|225
8Q5I|1|1|G|226
8Q5I|1|1|U|227
8Q5I|1|1|G|228
8Q5I|1|1|C|229
8Q5I|1|1|G|230
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 9
- Ribosomal protein L24
- Chain l
- 60S ribosomal protein L4-B
Coloring options: