J3_8Q5I_029
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- UU*AGAAG*CAAUUGA
- Length
- 14 nucleotides
- Bulged bases
- 8Q5I|1|1|A|1061, 8Q5I|1|1|U|1091
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Q5I_029 not in the Motif Atlas
- Homologous match to J3_8C3A_051
- Geometric discrepancy: 0.0976
- The information below is about J3_8C3A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11066.3
- Basepair signature
- cWW-cSS-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8Q5I|1|1|U|982
8Q5I|1|1|U|983
*
8Q5I|1|1|A|1058
8Q5I|1|1|G|1059
8Q5I|1|1|A|1060
8Q5I|1|1|A|1061
8Q5I|1|1|G|1062
*
8Q5I|1|1|C|1088
8Q5I|1|1|A|1089
8Q5I|1|1|A|1090
8Q5I|1|1|U|1091
8Q5I|1|1|U|1092
8Q5I|1|1|G|1093
8Q5I|1|1|A|1094
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 2
- 60S ribosomal protein L21-A
- Chain AC
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L7-A
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