J3_8Q5I_031
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- AGAUGG*CGUUUCAACG*CAACCAU
- Length
- 23 nucleotides
- Bulged bases
- 8Q5I|1|1|C|1552, 8Q5I|1|1|A|1554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Q5I_031 not in the Motif Atlas
- Homologous match to J3_8C3A_053
- Geometric discrepancy: 0.1043
- The information below is about J3_8C3A_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34234.1
- Basepair signature
- cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8Q5I|1|1|A|1533
8Q5I|1|1|G|1534
8Q5I|1|1|A|1535
8Q5I|1|1|U|1536
8Q5I|1|1|G|1537
8Q5I|1|1|G|1538
*
8Q5I|1|1|C|1547
8Q5I|1|1|G|1548
8Q5I|1|1|U|1549
8Q5I|1|1|U|1550
8Q5I|1|1|U|1551
8Q5I|1|1|C|1552
8Q5I|1|1|A|1553
8Q5I|1|1|A|1554
8Q5I|1|1|C|1555
8Q5I|1|1|G|1556
*
8Q5I|1|1|C|1574
8Q5I|1|1|A|1575
8Q5I|1|1|A|1576
8Q5I|1|1|C|1577
8Q5I|1|1|C|1578
8Q5I|1|1|A|1579
8Q5I|1|1|U|1580
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 8
- 60S ribosomal protein L25
- Chain AK
- 60S ribosomal protein L37-B
- Chain j
- 60S ribosomal protein L2-B
- Chain p
- 60S ribosomal protein L8
- Chain v
- 60S ribosomal protein L15-A
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