J3_8Q5I_033

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AGACG*UC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Q5I_033 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0697

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8Q5I|1|1|A|1650
8Q5I|1|1|G|1651
8Q5I|1|1|A|1652
8Q5I|1|1|C|1653
8Q5I|1|1|G|1654
*
8Q5I|1|1|U|1787
8Q5I|1|1|C|1788
*
8Q5I|1|1|G|1792
8Q5I|1|1|A|1793
8Q5I|1|1|A|1794
8Q5I|1|1|A|1795
8Q5I|1|1|A|1796
8Q5I|1|1|U|1797

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L34-B

Chain AQ

60S ribosomal protein L43-A

Chain j

60S ribosomal protein L2-B