J3_8Q5I_039
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8Q5I|1|4|U|60, 8Q5I|1|4|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Q5I_039 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0613
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8Q5I|1|4|A|44
8Q5I|1|4|C|45
*
8Q5I|1|4|G|58
8Q5I|1|4|A|59
8Q5I|1|4|U|60
8Q5I|1|4|A|61
8Q5I|1|4|C|62
8Q5I|1|4|G|63
8Q5I|1|4|U|64
*
8Q5I|1|4|A|96
8Q5I|1|4|A|97
8Q5I|1|4|U|98
8Q5I|1|4|C|99
8Q5I|1|4|U|100
Current chains
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 8
- 60S ribosomal protein L25
- Chain AI
- Ribosomal protein L29
- Chain AK
- 60S ribosomal protein L37-B
- Chain AM
- 60S ribosomal protein L39
Coloring options: