J3_8Q5I_040

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Q5I_040 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0599

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8Q5I|1|A|A|41
8Q5I|1|A|G|42
*
8Q5I|1|A|C|431
8Q5I|1|A|G|432
8Q5I|1|A|C|433
8Q5I|1|A|A|434
8Q5I|1|A|A|435
8Q5I|1|A|A|436
8Q5I|1|A|U|437
*
8Q5I|1|A|A|462
8Q5I|1|A|G|463
8Q5I|1|A|U|464

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal protein S4

Chain Y

Ribosomal protein S23 (S12)