J3_8Q5I_041
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 8Q5I|1|A|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Q5I_041 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0474
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.2
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8Q5I|1|A|A|41
8Q5I|1|A|G|42
8Q5I|1|A|A|43
8Q5I|1|A|U|44
8Q5I|1|A|U|45
8Q5I|1|A|A|46
8Q5I|1|A|A|47
8Q5I|1|A|G|48
*
8Q5I|1|A|C|429
8Q5I|1|A|G|430
8Q5I|1|A|C|431
8Q5I|1|A|G|432
8Q5I|1|A|C|433
8Q5I|1|A|A|434
8Q5I|1|A|A|435
8Q5I|1|A|A|436
8Q5I|1|A|U|437
*
8Q5I|1|A|A|462
8Q5I|1|A|G|463
8Q5I|1|A|U|464
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain K
- Ribosomal protein S4
- Chain Y
- Ribosomal protein S23 (S12)
Coloring options: