J3_8Q5I_042

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Q5I_042 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.0532

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8Q5I|1|A|U|1278
8Q5I|1|A|G|1279
*
8Q5I|1|A|U|1288
8Q5I|1|A|G|1289
8Q5I|1|A|U|1290
8Q5I|1|A|C|1291
*
8Q5I|1|A|G|1303
8Q5I|1|A|A|1304
8Q5I|1|A|U|1305
8Q5I|1|A|A|1306
8Q5I|1|A|A|1307

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S0

Chain D

Ribosomal protein S5

Chain S

40S ribosomal protein S17-B