J3_8Q5I_043
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 8Q5I|1|A|U|1399, 8Q5I|1|A|U|1400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Q5I_043 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.0697
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8Q5I|1|A|A|1321
8Q5I|1|A|A|1322
8Q5I|1|A|C|1323
*
8Q5I|1|A|G|1372
8Q5I|1|A|G|1373
8Q5I|1|A|A|1374
8Q5I|1|A|C|1375
8Q5I|1|A|U|1376
8Q5I|1|A|A|1377
*
8Q5I|1|A|U|1393
8Q5I|1|A|G|1394
8Q5I|1|A|G|1395
8Q5I|1|A|A|1396
8Q5I|1|A|A|1397
8Q5I|1|A|G|1398
8Q5I|1|A|U|1399
8Q5I|1|A|U|1400
8Q5I|1|A|U|1401
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- Ribosomal protein S7
- Chain R
- 40S ribosomal protein S16
- Chain S
- 40S ribosomal protein S17-B
- Chain V
- Ribosomal protein S10
- Chain e
- 40S ribosomal protein S29A
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